Scaffold Ga0334980

Basic Information
Taxon OID	3300033816 Open in IMG/M
Scaffold ID	Ga0334980_0010583 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033816 Open in IMG/M

Scaffold ID

Ga0334980_0010583 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4019
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (30.77%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4019

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (30.77%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F003583	Metagenome / Metatranscriptome	478	Y
F003714	Metagenome / Metatranscriptome	472	Y
F014261	Metagenome	264	Y
F024551	Metagenome	205	Y
F042864	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0010583_1135_1371	F024551	N/A	MTIIKPDSLPSLWWLFPWSMARQLHKNAVALKALTDKLDAEVKALRSSREHWVRKHDRAYEVAMHNERVIREMEERSR
Ga0334980_0010583_1788_2057	F003714	N/A	MPNAHHPYTETLTFAGRVIPLKRPMAEFAARRLQAILPQIAALNAAGKTQADAAAALDTTVCTLRTWLDLTGTTWVNLNRRGPYAKRNK
Ga0334980_0010583_2068_2406	F042864	N/A	MSNTTKPKAELVSDKAMTELLKRKAIDFRKAASLKDRDGCVKGLGAYALYGIDHVRGQLVVLASEPTAGDFNKYVTAKAKADVCSRYDQVVEYRDAGSHSNPKVTILCWHLA
Ga0334980_0010583_2426_2563	F014261	N/A	MKALATLFAIAAIGWLAIVTFCGPELYRVINGPEPVKSKAVRSHR
Ga0334980_0010583_2784_3110	F003583	N/A	MAKPPIRSASEANLTLAVLIMTIVAGLTALSCALTSSYVLDQLHSSEALALIVVDGTHIKSDSADLERNLSWATLALKSVRDLGWALAVGCLGVGVAVFLRSRRQNAS
Ga0334980_0010583_854_1138	F000957	GGAGG	MSTFKHLDGMVALLSEVYEINERIMTGDICSSKTAIASTRMKKLLHHYHEALHEDGAVKVSLQAYAAAGGWVGITYSYEVDGFEVAGSQVPRRV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334980_0010583

Overview

Ecosystem & Geography

Associated Families

Sequences