Scaffold Ga0334980_0006378

Overview

Basic Information

• Taxon OID: 3300033816
• Scaffold ID: Ga0334980_0006378
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5248
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009524	Metagenome / Metatranscriptome	316	Y
F036677	Metagenome	169	N
F048160	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0006378_1055_1549	F036677	AGG	MAKGIVIEGKFDRNYDQLRIGFLKGSNPSAFKRLMTFATLNAARTLQKPIKEKAPKGETGKLQKQIKARKARFNNPAAVVGIKGGRNGVFYGWLVVGGTGSRRTTRNGIVAVKPVKARPFVDDVVKRKTNIDRAVESYSKTISSFLNDEPFRNTILKFKRGNQR
Ga0334980_0006378_1549_1668	F048160	GAG	MFHILAEKFGMWPDEVASLPLDQVLLAWTIHTEMQPKGK
Ga0334980_0006378_3042_3473	F009524	AGGCGG	MTDLTILDALAARLEAQTDPTGYVLRKAYATPPESLPVVPSAVLFPGDDSITVGNGNRSTVLTVAVRIYLLPVPRMEDKYRDLYTWRSWLRTAFDGAVTISGNAVQVAVTATRLGTDTYADQDYLTVEADAEVTVFDTVTFTA