Scaffold Ga0334980_0003685

Overview

Basic Information

• Taxon OID: 3300033816
• Scaffold ID: Ga0334980_0003685
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6943
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002287	Metagenome / Metatranscriptome	574	Y
F004838	Metagenome / Metatranscriptome	421	Y
F022872	Metagenome	212	Y
F041161	Metagenome / Metatranscriptome	160	N
F079522	Metagenome	115	N
F083616	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0003685_1306_1710	F041161	N/A	MMSRQVADSIEFANDFLPARTTCQEIWYILKDNLIYKNDPPGIELLQSFPSLMEDNYWGIPGAGDCDCFTIAALACARARNIPARAVIVGNSSQAPTHIYCQLFDGSKFIDFDLVSSSYGTTKAYKNKQIIKLH
Ga0334980_0003685_1710_2480	F083616	N/A	MFLQLHDGPDLPYGLRPIPYPKRSGPIMPVSYAEDPFAPGSPVMQTTPYRLLSGCDQAQVYADFVPQNANGWKVRLDQVSSGQKLVKDYQTLREAKGTGSAPIYSADGTITGFKQASKAEVVAAYIQLGTKALQLAQAGVQAGEATRLRDDAQKLYNENKWGIADVCNQTLVMLQNNAQNCYDSLNWWLKDQGTPGKNAGQKRIANRSVVIRQNALLILVKEIEAKGGSFTPGGKGAPVGIAAILALVAGAAFLRF
Ga0334980_0003685_3529_4137	F004838	N/A	MALSAQDKILYVANKLGLSSLNLMQGSTGAVYDVDTDISGQIFTSASRHQNPGVTNVTQNEFEVNEALLVENIAFYVKNESGGVINFQTSYGSNAVIVFDLIIGNKRVMKDTPVFASGSPYTFANTANVNRLVGADSVQTLVPRHQVFMEGAGVLIPPQVQWYVDYRIFNVVTGATIVPTDGATIGCYLFGTRVLLNFNTSI
Ga0334980_0003685_4137_4727	F002287	N/A	MSQISKLGYVDSKLGAPSSGQQTTRILFNTIEAPGTTSGLNFFKNFQGLTQGQTNLTQNKLDSMESMVIKTIWLAQYTTGGVVSEVGGNVQQTLSIIVGNQTVVKNLPIQFNQSLNGQAFDRLHENAGVVTDQITSPTATAQTVLPVEIRLLTDVVIPPQVAFEVRIESNQAAYGTGAVVCALSGYGKIFSAGNTF
Ga0334980_0003685_444_680	F079522	GGAG	MNQNVVYGKDREAIVPYDVAIWWHLAFDVDKSIFNPTYIPKDLMEEIQQMQRRSIIKALPDSDPGRKWLILRFFPEGI
Ga0334980_0003685_4742_5131	F000710	N/A	MDISYRQGIRSKGFAITTPTGVTQQTLSLSGLAKSFEGILLTSAFTATPQTVINPKQLRVTLTINNDVVIDDDVALHYASPATGGFSGGFPFFIPIPRRLTGQDTIQIRFTNAAASQNVDVTVWYRNEL
Ga0334980_0003685_5202_5996	F022872	N/A	MSWQIPQQIEQDIIAGKAQYRTFQTGVGGQSILPVPNNAYAVVFGYDFSPAGGGFVFQGVPVFGTSGDAVISDTFIRFFETQQISFYTGTDFFPFIHHVNLKSTPRIVDATNSLARAFQEIDNTPIARQVYITSDKDITISVGLIQSSLANSTGAIPITNRTPALLTYGGSPQTLAVQTDFGPGGNPLQFMQPSPKDFQDFGFGLLPNNANGQAFATPDATNGLLDPSVHLASLGATFSNAAAANYFLCLHYALYTRTIPEQRG