Scaffold Ga0334980_0003313

Overview

Basic Information

• Taxon OID: 3300033816
• Scaffold ID: Ga0334980_0003313
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7282
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F048248	Metagenome / Metatranscriptome	148	Y
F053077	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0003313_1342_1830	F000716	N/A	MKMEKLKQNVTDYQLSAGKTYMQYEQDQYSQYQNYLYKRVLYGIDVLTEKELATMCSKKKQRIINVYKRAQVVLNKFKQELTIKYTNLLFKTLFPKSPITDILLSETETDEKFKNTLTFKDLNISKDDIITIFIAEGILPKNFLSLKEAPISLPMLKNASKT
Ga0334980_0003313_2415_2681	F053077	N/A	MYYQLPNGKVIYLTIEQYLELTEEDIQYLMSLDSGDHITNPFADSAVIENTKEKYYDFDYLPADESDDNYCDDTPFDDIIDLSDNLDI
Ga0334980_0003313_2838_3257	F048248	N/A	MRISVNYDDTDVAKALSKIIKDSNSEEFIKLLTPMICTSQHASEYFFKLMLGNKLPDIIPNGTLCKVPVNQLGYSSHKEAIREKFADDDDKVVVTVKEFRGFHEYSQYHIEYTDVLDNGTTKKDSTYVQAKDLEVVEEF