Scaffold Ga0334980_0002144

Overview

Basic Information

• Taxon OID: 3300033816
• Scaffold ID: Ga0334980_0002144
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9103
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001562	Metagenome / Metatranscriptome	670	Y
F002245	Metagenome / Metatranscriptome	578	Y
F009143	Metagenome / Metatranscriptome	322	Y
F038205	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0002144_2810_2950	F038205	GGA	MAKVKEYLEIIAVNCDECNGAGFLFWGDENNFDVESCDCALEKWGI
Ga0334980_0002144_3777_3974	F001562	GGGGG	MSKSQLEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHEDYLAELEKE
Ga0334980_0002144_4235_4408	F009143	GAGG	MMTKWDTIQADVADAYVYLDEEEMYNKALEEGLVIGSTEYDEDELSKSLTLDWESYE
Ga0334980_0002144_934_1209	F002245	GGA	MSVANGKILLFQQRKVTMSNLIKVPHTVVFEAIINLDTIPANLLPALIALDEATMTQMCKEATLHALHESNVLQTANEFNTWAEMTIKEGN