NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0002109

Scaffold Ga0334980_0002109


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0002109 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9165
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (92.59%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012108Metagenome / Metatranscriptome283Y
F043359Metagenome / Metatranscriptome156Y
F054798Metagenome / Metatranscriptome139N
F059898Metagenome / Metatranscriptome133Y
F088817Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0002109_1404_1577F059898AGGMTNDREKAMIYILSFFRNRMAAVNKQNVSQVKELISTHEIAVSELVDKYVELVYENS
Ga0334980_0002109_1570_1887F043359GAGGMEWFNSHKNPPEVGQKIYYFGPHIGIGIGHYSYQEDRGFFPYHYDENGLKVNEEKKIDLCPHIFTNEKFGVVDACDAPFWLPYDEERAKSWCPIIPEEYTKGLYD
Ga0334980_0002109_1887_2012F054798GAGGMIYLNINEIERLAEIVSELVKLGMSVTAELKYGRWQIEVYK
Ga0334980_0002109_197_580F012108AGGMINLQLSVREAMNLATSWAYNNDVELYHKIVNAFEMELGVNQNRTITITNGMNLDNRISCIKAIRLHTGWGLKESKDWTDALVGGWKYDKFVPASAGAKQSITLKTPEAAEKLLRDLAGLGCEGYLS
Ga0334980_0002109_5057_5314F088817AGGAMNGYELLAEFDRIIKDVILIPNDWLPENFRDNRTDSVSLADLERKCDSLEIGETDHQIEKREKDKRIAAYSAMIENGQEITYLPK
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