NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0002093

Scaffold Ga0334980_0002093


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0002093 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9183
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006017Metagenome / Metatranscriptome383N
F026257Metagenome198Y
F027501Metagenome / Metatranscriptome194N
F048282Metagenome / Metatranscriptome148N

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0002093_2669_3103F026257N/AVETINKKMRDGVPDMKISEWLSENAQYISRITLGKHKREHLTEPHERLRQQAVNVMKKQQKTIKATGDLAGLVRDYVHSAVEQGLMTPTLAEGLRAQEMIDRRQEKGADREIALTLAGILGGGTTYQVIEATEIKPISGGETEQ
Ga0334980_0002093_525_818F027501AGGAGMYSDIKAGIRWIIDNTGVDEALIEFGRTFITVSISVALGLGIPLLDITGGDFRTVLSAGLASGLQVLIKFLDPKNSAFGIKEKSAEDKAAADKQFDI
Ga0334980_0002093_7875_8270F048282AGGAGGMRDKRIKDYLDRAKRILNLSHWEIKISSDPPPDDAWADVEVSQNLYAATIRFSPGLWKEKPEEIRRVIAHELIHCHYAGVERLVEVVQDSLGTAAGEIVGKIWDVESERAADSLSTAVAELLPMPTFGDRS
Ga0334980_0002093_828_1436F006017AGGAMKFKVKSQLDHVEKGGILDDCGPSSTAAAVAWASKYTVDPSAGDGIKAKAKATGFVEKEGVSDNGSSLGDLIKTAKELGAKARYAKSWDDVVISAHRGAGLIIWVQQAVDYPPVEISEWHKKWQNYWIKKDKKHIAQGYGHMTAAAWDAVDGWQWACPTRSGKGKEKFGVSVTEDQLKQIAASKKKQTGGAAFKHVAIVEWK
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