Scaffold Ga0334980_0001895

Overview

Basic Information

• Taxon OID: 3300033816
• Scaffold ID: Ga0334980_0001895
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9591
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003540	Metagenome	480	Y
F003785	Metagenome / Metatranscriptome	468	Y
F062712	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0001895_520_771	F003540	AGG	MQKIVDMLFPVLLAAVGWLLTEIASFNNRLMSVESKMPALITPEGVPTDSPLSAARRQELKDDIMEDIHDLQVRVKLMEERSK
Ga0334980_0001895_774_968	F003785	GGAG	MSSVQDLEVTVTSHIDVCAVRYDAIHARLKRLENLLMRVGGAIIVILLGALGSMGMLLLEALQR
Ga0334980_0001895_7883_8281	F062712	GAGG	MNGRRPMNMPMQPDRRPQELARMLAMQERNSSLDSPVPPQPMRPSQAYAGATPNSAPGVAPQSMNFNGPAGPQQYRGPISNPAMSAMAPPQQGAPQIGGMRRPMGAGARGYPSSPGMTTPQGGAYRGDFDGN