Scaffold Ga0334980_0001685

Overview

Basic Information

• Taxon OID: 3300033816
• Scaffold ID: Ga0334980_0001685
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10185
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (75.86%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000450	Metagenome / Metatranscriptome	1126	Y
F000714	Metagenome / Metatranscriptome	924	Y
F001460	Metagenome / Metatranscriptome	690	Y
F002071	Metagenome / Metatranscriptome	596	Y
F004666	Metagenome / Metatranscriptome	428	Y
F007468	Metagenome / Metatranscriptome	350	Y
F014250	Metagenome / Metatranscriptome	264	Y
F020171	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0001685_2121_2279	F004666	N/A	LKGDNQMATKREYLKSKGITVGVRGRFSGAAKQALAEAEKNGVKFTAEVKTK
Ga0334980_0001685_2754_3047	F014250	GAGG	MRDINTEFHPRLQKLVDMGETGTNILHGELKNLMLEAETQLDIAQKTEDESGEAMDSMERTYWEGQLDALTEVYAMTYNLAFAINERTQKNEFSRPV
Ga0334980_0001685_3199_3378	F007468	GAGG	MYNQLVEYMKLHLISLNQDMDKDLNVESKINIQGQIMAIEHLLSVATDIMNNSNERVYG
Ga0334980_0001685_3477_3656	F001460	GGAGG	MLGYTESDLNRMINAIHDSKLFYLRTPSDLMDKEPLRKDLEDAVSFLQGLWAEGYFDYA
Ga0334980_0001685_3823_4038	F020171	AGGAGG	MSEQFIDTIAEHITGAMIQEIGEELFDQWSYNNLESGAEYAENQFMQYASMELKQQYNEYYGYKEGDEFYL
Ga0334980_0001685_5048_5452	F000450	AGGCGG	MGDRANFGFVQSNGETIVLYGHWAGHNMLGKLADAVIKARPRWNDESYATRIVISQLIGDQWNMETGWGLSVNNILDNEHKIAIVDFKQQTFSLHEEDERNNLDNKVNGMKNDAIFTQDLSVFCDKYAMDEILV
Ga0334980_0001685_6001_6459	F000714	GAGG	MEESTTAVTVPDTYNPNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNARQAQKQNGVYQDKINTVKDIITEAYADSDDQDTLRAIAEALGIELVREVLFTATLEVSGTYTYNVLDSDYELDLDSEVTDALYADSNNGNITIDDTEVCHVREA
Ga0334980_0001685_8832_8975	F002071	AGGA	MEIGQTYTTTQSGVTGVIKAVDNHPSGVNRILLDVNGTERWTSAPAN