Scaffold Ga0334980_0001534

Overview

Basic Information

• Taxon OID: 3300033816
• Scaffold ID: Ga0334980_0001534
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10643
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (79.17%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002060	Metagenome / Metatranscriptome	597	Y
F008814	Metagenome / Metatranscriptome	327	Y
F023851	Metagenome / Metatranscriptome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0001534_2714_2920	F008814	GGA	MANMTVLEEIIKEIGEELYQKWYNGLAIEDRTEESSKAMAANAGETAVWVIQTFMNKFNAAADELKDT
Ga0334980_0001534_5072_5374	F002060	N/A	MNLDLTTIIIAISAALLSGMGTAIIAGLSESKREKNRQKEREQDLLKIELKDLKIELYQLEKELTDWKDKYYKTIEELILIKSELENALRELNGFDFDEK
Ga0334980_0001534_5404_5553	F023851	N/A	MCESCISSKFEPRWLIILAGRQLGSDAVKDFVLKKKYVGLEITASELLI