Scaffold Ga0334980_0000289

Overview

Basic Information

• Taxon OID: 3300033816
• Scaffold ID: Ga0334980_0000289
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23663
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (26.92%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014513	Metagenome	262	Y
F015061	Metagenome / Metatranscriptome	257	Y
F054624	Metagenome	139	Y
F056542	Metagenome / Metatranscriptome	137	Y
F061533	Metagenome	131	N
F075040	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0000289_21153_22115	F014513	N/A	MADTLEEMVELVKGFVGDSGTCSDDRAIKAINQARRLLWNKRGWTSIEEYVQICCVNDCFTLPNRYEQIKLAWIGNESASLADEWFNATNAFALHADHSCHRLITEIGGLHVLFRDYTTHPYQLGIIAEDVEDAGTELMFEVQDQYDTYHKVNLFAAQSPNISKTDLLIKGVRAVSKPVTKGRIRVYAYDMELQARTLIAIYQPNDVNPTFRRFKAPKTCECITLYASKKYFDLTDPKELVEFIPDAMIYAILALNSRENRKAQEFMSNLGLAVQEQEKEMEGYEIPTAAPLRIANYSRADNLIGSDLLSPSPNDYFLYR
Ga0334980_0000289_22137_22301	F056542	N/A	MTPLKGTDPKLVSDGSPTRGSIREGMGNMNPPNSGKNPYSSAPMPKSGKPVGGK
Ga0334980_0000289_22804_23535	F054624	N/A	MIALDLDQSASPAPDAQLTFRWNGLWTGIRPTQMLSALIAGQKRGFAFSFDKDNKNRLYEITSEQTDDYGPNGTRKIESFFTTGRYDFNRSGATNKFLRKRITGGEMWMSEIKGEVESSVEFRADSNPCWSELKVPTTFGCNPCSPVVTECVPQRGGNRYKRYKFNTPDPSECNDLAGIPSVEGSEFQIKINLTGAATVDRVRLMANIKNNDDSPVGDCPEENQECEPFSCCQEKYWEYNIVN
Ga0334980_0000289_5684_5965	F015061	N/A	MSEPTPQNETSKAVLEAFTFIKSADETLNERVHAMSSLLHTAAMMVIKSESRKGEGFEAIRYLEMAFLYYTQAQFRKRFDKEEEKEEAPRIIT
Ga0334980_0000289_7601_8410	F061533	N/A	MSNQLEGIEQKDIIKRVTGKVTKLWEAKTFNGPKGEFVIQGGEIEIDGQTYGLKFFNNTQEQSIKGNVITLSSVRGKHGLTGVSLEHESYDGKNGKVDRDIIKVTATGKIEFDRPNEEPTRVTSTPKSIVTDNPEKALDEIVEMHQYIDSLVRMAYLGKIADEETLRSYVSSVFIEANRKGIHLSSKVEEPKKEEPVKEELDPEDWGSAIVPSGSHKGKKLAEIGKPALTKLYQYYLEKGFNTPFAKCVEKAAEDLNLDSPEESDDIPY
Ga0334980_0000289_9694_9933	F075040	AGG	VGGTTSVHKNQMKDTPKVKSTEAEIVPSQLTRDIYLRLISAAASDGKFEFGKLPNAQAVVKQGDHLKGVAEILATCYEK