Scaffold Ga0334980_0000188

Overview

Basic Information

• Taxon OID: 3300033816
• Scaffold ID: Ga0334980_0000188
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30056
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (40.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004740	Metagenome	425	Y
F014953	Metagenome / Metatranscriptome	258	Y
F016125	Metagenome	249	N
F048176	Metagenome / Metatranscriptome	148	N
F064515	Metagenome	128	N
F077042	Metagenome	117	N
F100667	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0000188_10826_11458	F077042	N/A	MNPKVITAALAAVVVCFAGVGVVTVKSVSKHIAASDKEFAMTSNVLSPLFDIYGLAIVDGQAKASKGLINANEFCDSLAKLQAEAERLLAEFGNPTQLVAQHKLVAAYLKKARSACDAGQIETLNSPAMTAELYAVIEPMTALINKALHEELTISRTHKDAADRALLTFERFASVAAGLGMVFAVAPWIGAKKKPVVAIAPKGRKKKTKR
Ga0334980_0000188_15917_16237	F016125	N/A	MAAVRDFDPTQINSDFSAILEQAGISFTYQGVAVTGIWSAASNAFADFEDQRRDDSKFTIFLLTTSVSAAPKVTQTLSRAGITYYVERVTLDAEGAGCELGVAKVI
Ga0334980_0000188_16234_17142	F100667	AGG	MISIFSDTKKLEYALARLADAAKVDLGLVIKQEGAYVARTIMQITPPTGDKLPKGSQTQIPLVTGGTITKTKAGGLSTNARKQGENAILGDLFGGRQLAKEKSIGLFQKIGNSTEVPPRDGQNETMGVNLGWEGSKKIRIYRKFWQPGASIAQMRAFHYANRNSRGRPKQVTRSAIGRWQVQDQMWISNQAADAYLKYTQKKVGLAKAGFAAAAMACGVRVPAWIRRHMAKAGTAQVQFGQNPFVSARTTGNKIPDLQRVVDSALKIRYKVTLSKIRALNANRAVNLGFAKVKGGMVIPKEA
Ga0334980_0000188_27560_27856	F048176	AGGA	MNNDNVIKSQAIITAATEQFRSLLETNFRSIAKAAQDGFTDDEEQTEPKAKATFAVEWDALAMAPKVSVKVGWSVRFRDESETEIDPLQSKLGLEVQS
Ga0334980_0000188_2934_3218	F004740	GGCGG	MFLGVARGRFDVSSSGMLDNPFLGLDTATLTALKTKTIDAIQAVLLNQSYSLNGKSVSRADLNALNNMLGNLQDALTDAAGSSTDTTFVSFTGN
Ga0334980_0000188_64_537	F064515	N/A	MTPKPKFTQLAERMGVDVRTITNWRKRDGFPNDGTVEEIKAWADSHGLGRVGGSGGGLADLKAELMREQIRLARSKNEREAGDVIDREVVEAMLVTLGQKLDLLLRLKLTIELGPRGVGMNAAQLNVEGGVILSEIREVVNANIATFESEALDRSRE
Ga0334980_0000188_9423_9563	F014953	N/A	MTTEQALQNLYAAARQAPLKADDHDLVRKCAEQIAEALKPKEPKAE