Scaffold Ga0334980_0000156

Overview

Basic Information

• Taxon OID: 3300033816
• Scaffold ID: Ga0334980_0000156
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32519
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (6.45%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025465	Metagenome	201	Y
F033727	Metagenome	176	Y
F039051	Metagenome / Metatranscriptome	164	Y
F056429	Metagenome	137	N
F058003	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0000156_16966_17169	F033727	AGG	MNYAAQVLSEANEVTRAMVKQYLQKHELSLNAFSKLVDIRQPNLHKFMSGSSLSSKSIEKLGEFFSK
Ga0334980_0000156_17606_17791	F056429	N/A	MNEDLKVMGYYKNTTREQIVQIKDFKKDKLWYETIRQHETNPITEFCCSIERFKRLYIKT
Ga0334980_0000156_19954_20247	F025465	N/A	MDELTIITGKVNLDTTYLKIKLSLEDIKEKHEHRTDLINSMERSLADLQEVKISYDAMEKELRTALQQNFRLEKLLQEEKFNNKDLELQLKMKDATL
Ga0334980_0000156_23929_24150	F058003	N/A	MAKKNLNVNIDTENIDVNVERKDGEVKVNYDSKNLDVKVEKTADNVEVKVDAQSGFFKLVGKILGKVLLRRIK
Ga0334980_0000156_24667_24894	F039051	N/A	MLPITQILDIIKKQGATGVLALWLWYTHSDVQDLKHRLYDCYGKGKSSSLTKQIEGTETYAVIPKDELNEINETE