Scaffold Ga0334980

Basic Information
Taxon OID	3300033816 Open in IMG/M
Scaffold ID	Ga0334980_0000133 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033816 Open in IMG/M

Scaffold ID

Ga0334980_0000133 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36281
Total Scaffold Genes	63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (50.79%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

36281

Total Scaffold Genes

63 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (50.79%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002867	Metagenome / Metatranscriptome	524	Y
F003805	Metagenome / Metatranscriptome	467	Y
F006785	Metagenome / Metatranscriptome	364	Y
F017824	Metagenome	238	N
F022403	Metagenome / Metatranscriptome	214	Y
F067680	Metagenome / Metatranscriptome	125	Y
F103129	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0000133_18903_19331	F006785	GGAG	MSGGEWTTRGQQREAREAEREHLRLLKRHHRDLRWAVERSRLEASDWADLLALQAELGKEGPLQLWRELVPYWRQCQALNGGADLPSALFPQATGVFSRDTSPAPAAPATRTKPGKGSPRKVRSDAGIAKPSRKGSSAKGAA
Ga0334980_0000133_24137_24334	F067680	AGGA	MTIQTVTGGCVHIDIDAEDGLTHATFVFKTPSLPETLGGFITMLAQGIEVLVPIADPEDEEEDDD
Ga0334980_0000133_2450_2725	F103129	GGAG	MAFTTSLSETNIGIPLADTYARITLMRCDKEQALMQVSHYANAEARHANASPVWDRTMFAPTSELQPGDNPLAIGYAWLKTHPEYADAVDC
Ga0334980_0000133_3015_3200	F002867	N/A	MTVIQSTNYPNNFRLEQLENERGVIYYRACVGSICRYAEDEYIARMYLEGMGWDPTHTAL
Ga0334980_0000133_4887_5108	F003805	N/A	MRPIEHTTESNFHKAATDKWLVERFNEGDYRGLLEAALLLNTLHQLERTKSAWAIREAADNLADRFGMDRDSV
Ga0334980_0000133_5280_5588	F017824	GGA	MNVLSWEENREVRFGEGISRTSAEKSALFELQIWLPGQGAMRDLVRAESLQQAVEFAKNRYPNCRVDTPVPPARKPKLARSHTSPSVAAKARKKLSETRNGN
Ga0334980_0000133_5885_6160	F022403	AGGAG	MPLRHGSKIYCQLLLDTNRYKLAEKLAATEGKKVTGLLREMVYAALEKALPASDYKAAEAADKAAWAESVQRRVQGRLRSKQPEGGSEPDA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334980_0000133

Overview

Ecosystem & Geography

Associated Families

Sequences