Scaffold Ga0334980_0000077

Overview

Basic Information

• Taxon OID: 3300033816
• Scaffold ID: Ga0334980_0000077
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46587
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (54.05%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008878	Metagenome / Metatranscriptome	326	Y
F010762	Metagenome	299	Y
F010994	Metagenome	296	Y
F022116	Metagenome / Metatranscriptome	216	Y
F065564	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0000077_1358_1510	F010762	AGGA	MNQTTLEIAFKEWWEASYGRHPGTHAVMTHVAFAAHILELLELMQDERSN
Ga0334980_0000077_28087_28392	F010994	N/A	MDLPSLRHFQNAGIYFISSDPVEALHGEAWVPAIYTDKGWATADGSKLLTGIEEWRNAAEERQITGCDLKQHQSRDEGGQTAKASNRNRAVKSRQVTQAEG
Ga0334980_0000077_34476_34745	F065564	GGA	MPEIKINVTGDDLARLNAEAAAHGIPRAHLIRQRALSGGVVAGLTTAAYHALVADACAFMRGDLNRRHVETLVAYVIAHSHSSQAAAGD
Ga0334980_0000077_5215_5400	F008878	N/A	MDRFADYIALVVAIHGVALIVVNLTPTPKDDAALTAASKAVVKIYRAIEILAGVITPFVK
Ga0334980_0000077_797_1006	F022116	AGGA	MTEPFLTTDELAARWGLKPAAIKNQRARGIGPAYITAPRIGLPAGTPRVRYLLAQVLAFEEANGITPLN