Scaffold Ga0334980_0000027

Overview

Basic Information

• Taxon OID: 3300033816
• Scaffold ID: Ga0334980_0000027
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 68936
• Total Scaffold Genes: 95
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (41.05%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049570	Metagenome	146	Y
F055663	Metagenome	138	Y
F065740	Metagenome / Metatranscriptome	127	N
F087062	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0000027_23881_24159	F087062	N/A	MTDPTFNLLQLASRPNWYDHLSQVEAAMAEQDRIDGARWRAGWTGDEGGWYAPCGMHESDWELEGYPFPEDPEFPAWAAAFYHYDTLDAAAP
Ga0334980_0000027_29110_29277	F055663	GGA	MTDFLNLKISQKKVVCPKHGTHKHYISSDIEGHEGNWCMLCWLESLGSSLPLVEE
Ga0334980_0000027_55429_55908	F065740	AGG	MSTFAFVNYARFTQRNGAATSPVHAYQNFSVNQPRIYSGVTYQFVPFAVSTGAGSKGGDRSEATLGAGTNAITVNVFAEAVNSGWLLELKTVSLNPETFADTALIRTEIWRVARYEMDTEKILLKLTSPLDAVREQVPNRYLNTRLVGALPTSATLVVS
Ga0334980_0000027_60229_60633	F049570	GGA	MAVTFPSIEPTSRSFVAPKWPTTGITSQSGVTTRRLWSSHPSQAQLTLGFSNISDDNAALILAAYSNAKGATTDLTLPAIIFQGASSNLTGWLNTTLNGGGIKWFFSEDPPSVESVAPGRSSVNLRLVAELRLN