Scaffold Ga0364926_040114

Overview

Basic Information

• Taxon OID: 3300033812
• Scaffold ID: Ga0364926_040114
• Source Dataset Name: Sediment microbial communities from East River floodplain, Colorado, United States - 65_j17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 890
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → environmental samples → uncultured Gemmatimonadota bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9229
  • Long. (^o): -106.9499

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009097	Metagenome / Metatranscriptome	323	Y
F058905	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0364926_040114_290_616	F009097	GAG	MRKWIGALSLVWLLWSDLSVIVKDSPLDTIVLRWLARVPRLQTDRIIAGRYVTGEECKVALERHLVTVKAINDSWSGHAFEREGDTGTIHYFPDGIVYARAALRCAEQ
Ga0364926_040114_619_888	F058905	N/A	RLESLEDEQEQLRAELALLRGDAEAYEGTPSIFVTGWFRATLILIVLAIVVVITVPWLMDLLEGGARDSPPPVRHEAPAASPNPTPSSR