Scaffold Ga0364924_026731

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0364924_026731

Scaffold Ga0364924_026731

Overview

Basic Information
Taxon OID	3300033811 Open in IMG/M
Scaffold ID	Ga0364924_026731 Open in IMG/M
Source Dataset Name	Sediment microbial communities from East River floodplain, Colorado, United States - 28_j17
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1163
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location Name	USA: Colorado
Coordinates	Lat. (^o)	38.9229	Long. (^o)	-106.9499	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003623	Metagenome / Metatranscriptome	476	Y
F014716	Metagenome	260	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0364924_026731_550_909	F003623	N/A	LCFEDDDARIVLLFVRLRSLLFALCPDHPVALCATCRRTYTPEQLGTEIGDGCYLCRHCGTDLRESVVAHARTCPNLIPQKPLARMASVTSSTTPPVVSERFAARRRARLGVDVHAAAG
Ga0364924_026731_76_390	F014716	AGAAGG	MVVVLPIATIKRILDRVTSLPGQASEFVPGTDSPTQTTKPLPKLPENIVSALEKSRDDKTLIDGGKHVGPLRRDDFTTLRDWCRAMRLGSDAAAVEAAVTAAPK

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