NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0364924_021813

Scaffold Ga0364924_021813


Overview

Basic Information
Taxon OID3300033811 Open in IMG/M
Scaffold IDGa0364924_021813 Open in IMG/M
Source Dataset NameSediment microbial communities from East River floodplain, Colorado, United States - 28_j17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1269
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022956Metagenome / Metatranscriptome212Y
F040350Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0364924_021813_1_474F040350GAGGMLNRWHRLSLQVKMTLIIICIVGVSAVTTEWLEARSIQHTVEDNVRNAALAVGRSVNHNVTSLAQLSNREARNKELEKILATLPDLLNIVLYEFPAKPGNNPLSITSAGSTELPRQEGAPALVQRVREERQPLIDYADRTNTHRVFLAAPIFLRDVVV
Ga0364924_021813_721_1110F022956AGGAGVTGRILLVEANVVLGDVVEEVLRHGGYEVIFVRTLLGEVERLDSLSAVILDIDTTSPEKELVWLGVLQPDDDFLPIVLMGLQVQQELCHRLRLHLGPQQTNVLTVLQKPFRNKELLAAVRQAQASNLPG
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