Scaffold Ga0314867_041131

Overview

Basic Information

• Taxon OID: 3300033808
• Scaffold ID: Ga0314867_041131
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1086
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -6.3272
  • Long. (^o): -74.8136
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045285	Metagenome / Metatranscriptome	153	Y
F052095	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314867_041131_3_473	F052095	N/A	MKTALYGRIVFGGSAVLFGVIALMWHDPETWQNLRHIWSLPFGVFIGGCLMTAQIAGGVAMQYPRTVRLAAVVLGVVYLVFALANIPDIIAASNVYERYGGSFFQFFCMLCGAIALYAATEADAGRATAFGRVARVGLGLCAISFTLGQALLLQDTA
Ga0314867_041131_721_1065	F045285	GGAG	VINKISVCTALLVCLTAPALCQSKDTRIGDDYAKAALRAVIYTNETDISAERVSFLIDEADVEASTPAEEANLKELNRILRVWLSRRINDNQVCYQAFKSNLKARSSAIPEACK