NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314866_096044

Scaffold Ga0314866_096044


Overview

Basic Information
Taxon OID3300033807 Open in IMG/M
Scaffold IDGa0314866_096044 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)530
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-6.3272Long. (o)-74.8136Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017913Metagenome / Metatranscriptome238Y
F074051Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0314866_096044_2_181F074051N/AAAEKLREVAPLLAESDDEDNAVLAEVEDATSQTDAMAAKAGAGNAGSSKASRPTAPRWP
Ga0314866_096044_206_529F017913N/AMNLQALLVSSDNSAADVLGRVLPTLGIAMDRSSDTETTLARIQQQKFDTLIVDFDDPKGADEVLQLARRLGSGPLTVALVGDPGKVREILSGGAHFVLHKPLTDEVAK
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