NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314865_096019

Scaffold Ga0314865_096019


Overview

Basic Information
Taxon OID3300033806 Open in IMG/M
Scaffold IDGa0314865_096019 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)777
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-6.3272Long. (o)-74.8136Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062936Metagenome / Metatranscriptome130Y
F070797Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0314865_096019_206_535F070797GGAMENHACPLCFARVPRTLMLTKTLEVSCPACHAELEVSRGSRVLASFVGILAAFLAARPVGHVSGTAGWTLPIVAAVTVYGICAALVQFVFSELAVRPKISPTAFPHIHA
Ga0314865_096019_588_776F062936GGAGMASYAQFLGRRVTVQYRAGDILVPASGTFVADSGRSIFLEQHIEQRGKRSYFRWEIPYGYLQR

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