Scaffold Ga0314864_0070479

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0314864_0070479

Scaffold Ga0314864_0070479

Overview

Basic Information
Taxon OID	3300033805 Open in IMG/M
Scaffold ID	Ga0314864_0070479 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	823
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Peru: Loreto
Coordinates	Lat. (^o)	-6.3272	Long. (^o)	-74.8136	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004502	Metagenome / Metatranscriptome	435	Y
F026928	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314864_0070479_127_414	F026928	GAG	MPCPFFMFWQLCVALCEADGEGVAVAAADPLLAAVVPDGDDDVDEVVDAGVDELLVAALATAMLTPSPTPSAPAPTAAAMMILPRLDLNVSSSSW
Ga0314864_0070479_513_821	F004502	N/A	TQQFRAAWQAAADAVNEWTHRVSEATHEAVDKIEPAVRAVVEAGRSAMTGEWRACHCRCGTAHPDDSGVCDGRAVMTRRVGEADVSMCAPCAVAQGVAEMKP

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.