Scaffold Ga0371489_0055152

Overview

Basic Information

• Taxon OID: 3300033755
• Scaffold ID: Ga0371489_0055152
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB26FY SIP fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2605
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: McLean, Ithaca, New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005865	Metagenome	388	Y
F009563	Metagenome / Metatranscriptome	316	Y
F028588	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0371489_0055152_1_777	F028588	GAG	MEDGINPDRKKQSQSFRWLHEIDQILVVGMKYGPTGTQEAVKRVRQLTPELVPAQVWHRMRHLREKERGKSAAPVDWSESAIEILREGYRSGGRKKTEAIKIVRALHPGVAGYVVSRFARSQGWLDKQQADKRKGDRRPWTSEEEQELFARAGYEPVKAIAEKLKRSEQSVRFRLKGRAISARVTDGWSLRRIQQTLHISHRRLQRLIGSGLLRVRDPRVTAISLAEFCRIHGTVALRGIEQKTDAAVCDENKGYSWGR
Ga0371489_0055152_1022_1588	F005865	GAG	VLSGANPRLDSATESELSKAAQSAWPKALAHVRQVQSRNPFDDDGILVAEVWESVLQSVSRTLDRMNGRRGEIGDLEAYLLGSFYHRLRRALKKEQRREETIHLVSSAQELEVLGKTSQAEQHDIEGTLHAQEILDRMDDWSRKVWIAREYGYTWKHIGRVLGVPGDSVMLRFRRRMKILRARLTGGR
Ga0371489_0055152_1808_2335	F009563	AGGA	VSLTEAEPWLDHLGSCSPCFQEFKELRRQSTIQRRHVLTWVATAAVLLFALGGWLWVRGRHSVVTTDTAVLDLRERSVARGQSQSEAGQVPLEIPRTAKHLILDLPIGSKEGAYEVGLLSDTGDQLLRATGMPELHDHIMGLRVDVDFSSIRPGEYFLGVRQASLGWTRYPIRVF