Scaffold Ga0371489_0046036

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0371489_0046036

Scaffold Ga0371489_0046036

Overview

Basic Information
Taxon OID	3300033755 Open in IMG/M
Scaffold ID	Ga0371489_0046036 Open in IMG/M
Source Dataset Name	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB26FY SIP fraction
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2971
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location Name	USA: McLean, Ithaca, New York
Coordinates	Lat. (^o)	42.5488	Long. (^o)	-76.2662	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F062611	Metagenome	130	Y
F094736	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0371489_0046036_1652_1864	F062611	GGAG	MAKIHFVHAATDVGVPVVKASRATIDEALREAEFELSGAAAFVWIVDGDGRLILPADQIKSRLNRSARAP
Ga0371489_0046036_263_493	F094736	GGAG	MAARPETCFVTSATRRNACGSEFGYPTVEAALRAAEVILGKNAELIWIEDREGNLILPADQVRLRVSSLRSAPGAR

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