Scaffold Ga0334844_008856

Overview

Basic Information

• Taxon OID: 3300033743
• Scaffold ID: Ga0334844_008856
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 714 E1 5-9
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2051
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3533
  • Long. (^o): 19.0467
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027393	Metagenome	194	N
F030957	Metagenome	183	N
F050079	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334844_008856_1348_2049	F050079	N/A	MIGFYQDATLQDPAVAATPKRFLLPLAGGVKPGTLYLGDPYTATVTAPAAIGAAVVSLDQTFQFPASGSAVVYVPANGSTAASQMVISYTGTSNNSLTGVTGITQTIGDEYLIRPNIVWRSRGNVVFFGSGSDVPNNLLVAFGVPTNPSASCRSTAFGVAGGAYISAAQSIAAGAENMMRIDIRVTVPPGVQQEFANWGVSTSSFFAYQSGNTSAIPTTALGVVPMAAGYVIRR
Ga0334844_008856_680_1348	F030957	AGG	MLASLVCRASTYEGEQDQVCLQLGLTQWAGIAVSSTSLSMTITVCIGLVTVVLNGVTYTIPTVTMAPDDYWVWRKISDVVNDLNAITGVTATLLGPDGPALQIAKQSNQFTVPSEAITMTDQMLAHANVIESSLTFSVAPGSYVFNPQTGELIISGTLPAGLSVAYQYTAMPYNIVCSELGLFGLVEPSLATVGVSSDNVLAYQLREVVQAVMNADPSYWAQ
Ga0334844_008856_70_612	F027393	N/A	MTTEPLYGLNVKYDISKPGAIRYAILLPVPYGSASTASNWRYLVMTPDGNFQVLLPDGMLVAYSGSAGWQSGTLSTPAPVSLALTMIGTYVLMLECMGNGQTAIADEVPYPNLATPVINTYDLSSIVPAIQGIAYDVMGRLWVWTGSNAVAIKPRYDGYILDPNSLAIYLTDTYDSVSFE