Scaffold Ga0314858_050117

Overview

Basic Information

• Taxon OID: 3300033742
• Scaffold ID: Ga0314858_050117
• Source Dataset Name: Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawater
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1010
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.2943
  • Long. (^o): -156.7153
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F049286	Metagenome / Metatranscriptome	147	Y
F060432	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314858_050117_131_373	F060432	AGGAG	MTYEITHEQRLELLEAHNKLRRALSMITDCHDLWLSDIRNLEKLECDLHSILKFKPREDSDGNSIFYANWVLDEDDDNDS
Ga0314858_050117_506_688	F002430	AGGAG	MMMTLNLPPKQVNAILVALDAEIEMQLGGRPVDWESFPEIAAMLMAYYTTRCKFEENQDA
Ga0314858_050117_672_854	F049286	AGGAG	MMPKYKVTRSYTVICVATVEADTHDHAEEIACDSGDIHWKEYDGDYDTEVYVEEMDDDDA