NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314858_044064

Scaffold Ga0314858_044064


Overview

Basic Information
Taxon OID3300033742 Open in IMG/M
Scaffold IDGa0314858_044064 Open in IMG/M
Source Dataset NameSea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawater
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1067
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.2943Long. (o)-156.7153Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013135Metagenome274Y
F031664Metagenome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0314858_044064_2_586F031664N/ARKREKAFATLKQKILTESIGHDTFVRKIEQGNKFYTYQTEQKKLLEGTFFNAFDASFNKGVNKERASEAGLEYESRIDLYVQSNPDATYNEQQQYARDLRLNLVDKYDDVTTEQITAFNLTENKFNVVRETASVFEWYSEYKKNPSLKDAEGKPIRNTLVSLAKLNGYVDEDGKVQVNKFFNDYVEILKSRQEG
Ga0314858_044064_589_1065F013135AGAAGGMADVQLSEEALRFLEEAEKSIKKIEPVNSGLITNPDENDFNFWNKALRLTLSAGQGVVNAVEESGDFIDENIVSLGGLAFGDGDGKTELKDFIPKYVTPKKWKEGAYSQQRNLPVFHKPEGLAENLTEGAARFVTGFVGPSKILKGVGLGGTIIKTGLR
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