Scaffold Ga0314858_022686

Overview

Basic Information

• Taxon OID: 3300033742
• Scaffold ID: Ga0314858_022686
• Source Dataset Name: Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawater
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1394
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.2943
  • Long. (^o): -156.7153
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019561	Metagenome	229	Y
F024420	Metagenome	206	N
F031295	Metagenome	183	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0314858_022686_1105_1392	F019561	GGA	MTDKFTRPILRDLRISLEDILRAESKSDKIPFELTLGNCSFEEDKATFKLVVTFKGNSVQDIERKKQKEDLEYYAKYYDLDLNRKHSRYTLIGYKV
Ga0314858_022686_2_208	F024420	N/A	GRKIINLNSCWQQEGRKFELLWNLLLSSDKRSFSEYFEEEHSIKLYDAMTFKEILILCRDYNVGGRFK
Ga0314858_022686_393_740	F031295	AGGA	MVRSEEKLFNVISALTDEYNNFDKLTKRLRKPQFLDLVNDLEIVDEELHDLKTPPITDGMQIDNKVCMFYVITELKDILTRDDEQKMIMITEFYNTLVFNLGVNTLNNHNNDWEK