Scaffold Ga0314858_015758

Overview

Basic Information

• Taxon OID: 3300033742
• Scaffold ID: Ga0314858_015758
• Source Dataset Name: Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawater
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1601
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.2943
  • Long. (^o): -156.7153
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003051	Metagenome / Metatranscriptome	510	Y
F004856	Metagenome / Metatranscriptome	421	Y
F010532	Metagenome	302	N
F020816	Metagenome / Metatranscriptome	222	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0314858_015758_1090_1260	F020816	GGAGG	MKVYEITVSTTVQIDSLDDYAESKEHAIDIMWDRWGVYKDTLEITKVKTWEEDDEH
Ga0314858_015758_1260_1529	F004856	AGGAGG	MMSDWLEGTKPKIIEARYSAYLSWDLEELGIDWDEVEDWDLSRADLEITFKDGTKKTYENWQDLDIDYKHNFEEVLILDEDWNQVEGLN
Ga0314858_015758_2_235	F003051	GAGG	MKTKILKSKVTIDMSVSEYDDLFKYINKLDSMLNTLHETNDLWLSDVSNLSSLKWELTQLLDAEWNPDIYRYVKRGSK
Ga0314858_015758_703_942	F010532	AGGAGG	MMSKTLYKRLEDICAREYVVNKLSANKFRTFVDYLYDDIKMWDKPMSVSEVDIIHRIEEHMSYMVSSFLNRAYEGTNVS