NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0314858_000694

Scaffold Ga0314858_000694


Overview

Basic Information
Taxon OID3300033742 Open in IMG/M
Scaffold IDGa0314858_000694 Open in IMG/M
Source Dataset NameSea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawater
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4448
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.2943Long. (o)-156.7153Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004537Metagenome / Metatranscriptome434Y
F094795Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0314858_000694_1249_1848F094795N/AMKSNEILILGGTILAALVLFKGRASSSINQSIPFIAPFSNLLGKAEAKAINQFGSNIETLKSVKESNLGIAQSILDLERNTADVKISQVQTELDKVQGFIGSQQKFAASGAFASLSPQGFTAQGLLAKFSGVSQGKSLFPDFRLIANRENFGIVQQQAQFEIAQGKIGKANEMIIRQQGEIDRLNEEYQTRFGGISRYG
Ga0314858_000694_3287_3646F004537AGGAGMPFSNSIVNNFQLNSGNTPLLYPVRVICLAGVTTGISFPDQFLGRAISLKITNNDAANAASYDYNLNGQFQNLAASAFSTIDNTVINYLTITAGAAGTVLVEAQVLPASRSEIPIEVQV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.