NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314858_000074

Scaffold Ga0314858_000074


Overview

Basic Information
Taxon OID3300033742 Open in IMG/M
Scaffold IDGa0314858_000074 Open in IMG/M
Source Dataset NameSea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawater
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9262
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.2943Long. (o)-156.7153Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004880Metagenome / Metatranscriptome420Y
F017420Metagenome / Metatranscriptome241Y

Sequences

Protein IDFamilyRBSSequence
Ga0314858_000074_2983_3408F017420GAGGMNQNKIKKISVKFPNFVSKDNIEYEGKRIVLKLPQIQDVNNRMYSELFSGDSGMQVGARNLPRIEGFNCTWRNDEKNPQFTIAQFTMASGEEHKVMKIVEKYGGQVIESRADLNQWQFDETNLSGNTYQVENVNETIGGLR
Ga0314858_000074_585_839F004880GGAMSQEFKDHAEAGEEYTCDKCDVSILSPDEYDQYIKFQYHYCEPCWNYMHLKKGTCDSCGSTMTNRSEQPSIFISCGCGSKVELK
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