Scaffold Ga0307390_10027224

Overview

Basic Information

• Taxon OID: 3300033572
• Scaffold ID: Ga0307390_10027224
• Source Dataset Name: Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean ? PS103-4.R1 (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2278
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): -55.8778
  • Long. (^o): 1.056
  • Depth (m): 24

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047411	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307390_100272242	F047411	AGG	MDFSACGYAVDIKDSCEEYAECYKGRQEAYMLEEAVVKGCKLPAKYCPKELANKDKIVTGNEKDRKAEWVGLKKMKCLVDAFGDGKVESAEITKCKNGNHSTTHLIIKYPTVKDMDKCEVPKLYPSTAEYKKTEFAPLPALAKGKSDANECTGVAEISTKPASGSPSTCKCERLTMNGPFSAGPMVKCVNCLDVRRTADKISCPDGTKLFSPRSRSDWKSFISSAQPLRAPNWIIDVTRPQNGCGGCTGNPMNSGNARQATWTTQDASPWWLRSTRYSEPNGDYHANCYLDLWHSPRNSDSVTWNDGSCSYHAKSYFCQLMSISTTPKTGSPKGCLCELVALTGSYSAKSILKCKGCLDVSKSTQKNSCPKGTKLFAPASRGDWKTFLGSAGPLRSPHWIIDVTR