NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0371490_1056301

Scaffold Ga0371490_1056301


Overview

Basic Information
Taxon OID3300033561 Open in IMG/M
Scaffold IDGa0371490_1056301 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB28FN SIP fraction
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1148
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: McLean, Ithaca, New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057830Metagenome135N
F065360Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0371490_10563011F065360N/AAVLPFNARNVVPPPAVVYTGAQYEFGVADVSGEAWTASSGVFVSGPNRFVGIPELIRFDAVSTDGISNATYTGTYVPPNLINKIPSAQNSSGSLAHMMSGESLAMSEDTSGGPVDFYLCFQAFDNTGTVIKQNLTGYLLPTGGSGQCFSFTYPFINGWSIGSGALSQIDHVDFYIKIVHRSSSAVAQHYMLQVTGQ
Ga0371490_10563012F057830AGAAGMFNSLLLDSNDSVIADRLSRLQDSLRGLTLSTREEYQAAVYSMVNTVLNLGDNMQTLTQIRSKPAIVGDLSQNLTLLNQDSNDIAAEILRIENSAGDLYNLAAASQNALRQLIRQSIYISNQQQFLAPFIDDSVLQPGYTATLDYNAGLATLPLGTQTLLSPTFSIGIGSSGSAVNAISSLSS
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