Scaffold Ga0316617_100545472

Overview

Basic Information

• Taxon OID: 3300033557
• Scaffold ID: Ga0316617_100545472
• Source Dataset Name: Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1064
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 41.3776
  • Long. (^o): -82.5117
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F007470	Metagenome / Metatranscriptome	350	Y
F013892	Metagenome / Metatranscriptome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316617_1005454722	F000311	GAG	MYFELTAPNQLALQRAYWSAEMIGLDPQLIAPLTFNIGTGSIEKVSSIRDTYNLKETYVSEYEPTGYTGR
Ga0316617_1005454723	F007470	GGAG	MDYQDGFEDGVKFAREVIIANIRLWAEDTVLGEEGQVMDDIADRLEFGTVDYDL
Ga0316617_1005454725	F013892	GAGG	VGDRANFGFVQPNGNTIVLYGHWAGYQMLGKLADAVIAARPRWNDPAYATRIAISNIIGNDWNAETGFGLHVNEISDNEHKIAIVDWEQ