Scaffold Ga0316617_100317193

Overview

Basic Information

• Taxon OID: 3300033557
• Scaffold ID: Ga0316617_100317193
• Source Dataset Name: Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1329
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 41.3776
  • Long. (^o): -82.5117
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012570	Metagenome	279	Y
F019121	Metagenome	231	Y
F095133	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316617_1003171931	F095133	AGG	MNESRLDTAAAAGTSGRPYPHYLERVDVLLDDAWWSIWVDFEPADASVGLPATAWLVHAHVAEHYADIADYLSESTIKRLEAEAVDYLSEGR
Ga0316617_1003171932	F012570	GGAG	MQTIIVDGTTYKVKFDRDPIELAKLARKPYKPKKPKDIRKFPFWTESVSTAEYIRRFDVLNFLQPVQYAGASADTAAQYDPTIPLIEEIALDWTGAPLRAPMPGQTIKR
Ga0316617_1003171934	F019121	AGGAGG	MAYTLKRSINGLTHEDIKRIYDQNPNLTLKELSNLTGYAIPYLKKILMEG