Scaffold Ga0247830_11011441

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0247830_11011441

Scaffold Ga0247830_11011441

Overview

Basic Information
Taxon OID	3300033551 Open in IMG/M
Scaffold ID	Ga0247830_11011441 Open in IMG/M
Source Dataset Name	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	663
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.673	Long. (^o)	-77.032	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005471	Metagenome	399	Y
F011645	Metagenome	288	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247830_110114411	F011645	AGGAGG	MPKVTIHLGTRERMEPRISKATRLGAIGTEALVYLGAVCFSGPATAMRALADALLEAADLADAYDADPDAFNEREQADRA
Ga0247830_110114412	F005471	AGGAGG	MHSSPYPTRPQPEPALHLLGGIWIASCPTCGFQLTTARTQPRCERRATRRLCPVCHQEGR

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