NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247829_10430082

Scaffold Ga0247829_10430082


Overview

Basic Information
Taxon OID3300033550 Open in IMG/M
Scaffold IDGa0247829_10430082 Open in IMG/M
Source Dataset NameSoil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1088
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.673Long. (o)-77.032Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081550Metagenome / Metatranscriptome114Y
F092010Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0247829_104300821F081550N/AVISGGIVLAVLGTGLLAQTSGASPDARTASFTPCNISGKQQQLGASYVTSLTVQGVSCAKAAKVIKSYHQCRHQAGGAAGTCGATLLGFKCKDGKRTGVPNVQYNATAKCHKVSNPSKRVKSRYTQNT
Ga0247829_104300822F092010N/ALKRALLLLFAIALATGLLGCGGGGDDSSGSTSTATLSSCDINGKQQNLGASYVTTIDVAKVTCSQAEKVVMAYHQCRAENGGAGGTCDAPVQGFTCTEGPRQSVPGVQFN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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