NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316212_1000859

Scaffold Ga0316212_1000859


Overview

Basic Information
Taxon OID3300033547 Open in IMG/M
Scaffold IDGa0316212_1000859 Open in IMG/M
Source Dataset NameSpruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3952
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9979Long. (o)10.7895Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001920Metagenome / Metatranscriptome617Y
F002886Metagenome / Metatranscriptome523Y
F018804Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0316212_10008591F001920GGAGVFENRVGEGMALNWRGPLLAAGIFAAVFAILLLMAHQNQSNTSDMGSSLREDPYGTSLLFDACGRAGYQVKRSQDEDSLADQNASTTTAFFIGSNPLAHWDPDNKNGPEDKFRGRLEDFLARGGRVVLVAHGLELKSKSQGWEVENKWDQGSHDTNNPTWISPDLRALPAASEMMYAGGESPWLKTDEHWTTLYAGPADASAKADASPRVYMAMRRVGNGEIIAASQESFLLNEAIKTHPNPVLLDFLAGERPVIWVDETLHGLHQEQGVLWLVQRYRLQAALMLFWATLLLLLWSMSGDLVRRPRHDRASQIMRDGEDTGVAARRLLQRSVTPEQVVAECWDQFCRRSPQDAQAISADP
Ga0316212_10008594F002886GGAGGLKSAFRKISRVGSLTGGTKWYLSEDCLLAAKRVMYAVEYRRFYLRDVESIVVWPTRAWLWRVAVEVVLFAGISLLFWQWSSTTGAIFLGIGLALAAWELALGPTAGARICTTGSSVDLPLVARTRRARKVLATIDAGIRSVRGVTEQPAAPISNIEPAQLSPQMPAQTNFEVTPGSVPVADAPQTNGS
Ga0316212_10008595F018804N/AYDSIAVTIGWGWILFWPTIVAAIPAAIFLHIKYRKAPRSYLLPRHGWRFWMAYAGLAWLPLLLGGSLLLRWMARRP
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