Scaffold Ga0316596_1248750

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0316596_1248750

Scaffold Ga0316596_1248750

Overview

Basic Information
Taxon OID	3300033541 Open in IMG/M
Scaffold ID	Ga0316596_1248750 Open in IMG/M
Source Dataset Name	Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	501
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Salt Marsh Grasses In Alabama, United States

Source Dataset Sampling Location
Location Name	USA: Alabama
Coordinates	Lat. (^o)	30.2619	Long. (^o)	-88.2383	Alt. (m)		Depth (m)	0 to .07
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052283	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316596_12487501	F052283	AGGAGG	MNPRQKSMIIGGVLGALMGVLGGYLFTRGLDMPREEEEEPQRLSLRSVPPGEMVKLFIAIMGVLRGLAELGER

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