NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316596_1176601

Scaffold Ga0316596_1176601


Overview

Basic Information
Taxon OID3300033541 Open in IMG/M
Scaffold IDGa0316596_1176601 Open in IMG/M
Source Dataset NameMetatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)590
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Salt Marsh Grasses In Alabama, United States

Source Dataset Sampling Location
Location NameUSA: Alabama
CoordinatesLat. (o)30.2619Long. (o)-88.2383Alt. (m)Depth (m)0 to .07
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077370Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0316596_11766011F077370N/ARVLKNNTQQLAVPRPMSILGETINRAIDILINIYAVNSLGTPFYSFTSTQGAPSMSLNLTDSMILQFTEYSELTRIYGLCKLKKIQLGFSRSSNFIGGGATTLQNTPSLFLQASTVPYPAGSVTLQRSVAQADNSVEIDLQTFEPKAFNIMLPPHLVSNNRAQNQTFVFGSQTWISTKLNNVQNFPDLFINLGSLA
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