NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316586_1071389

Scaffold Ga0316586_1071389


Overview

Basic Information
Taxon OID3300033527 Open in IMG/M
Scaffold IDGa0316586_1071389 Open in IMG/M
Source Dataset NameMetatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)640
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Salt Marsh Grasses In Alabama, United States

Source Dataset Sampling Location
Location NameUSA: Alabama
CoordinatesLat. (o)30.2619Long. (o)-88.2383Alt. (m)Depth (m)0 to .02
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077370Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0316586_10713891F077370N/AYNTNKQSRRNRKKLLKNNSQQLAVPRPMSILGETIDRAIDILVNVYAVNSIGTPFYSFGTATGIPSMSENITNDMILQFSEYAELSQIYGLVKLKKIQLGFTRASNFIGSANNVLENTPSFFLQTSTIPYTTGSVTLQNKVAQSDNSVEVDLQTFEPKAWNIMMPPSIVSNNRANNQTFVFGAQVWVSTKLNNVQNFPDLFLNLGSLAQPTF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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