Scaffold Ga0316628_100138925

Overview

Basic Information

• Taxon OID: 3300033513
• Scaffold ID: Ga0316628_100138925
• Source Dataset Name: Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2820
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 41.3769
  • Long. (^o): -82.5097
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013805	Metagenome	268	Y
F033384	Metagenome	177	Y
F053407	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316628_1001389251	F013805	N/A	PVLGFLHITRVHGPLDPVIAEYRIVFAPLGGRLHNRHAQCQGLDALTDFLRQAGVPLPEIEQAWQNLAKRRIYSVPRVALTHAQIEALGL
Ga0316628_1001389252	F033384	AGGAG	MGVYAEVRDFVLAHRACAGPRQANAGVPTVAGYRLLVVCGCGAEFKRWVTLDDADENLLKSALLAFDN
Ga0316628_1001389255	F053407	GGAG	LTYLDMSQIDATALFWANSVLWIALWAVFIARLAWLDLQLRAHLAAHHPHRWRRLSWSERLTWSAWFVFQSKEDYGDPAIGARRREMLTVFYDMLLVLAAMIVWVVVSAAMVQLGPKW