Scaffold Ga0316628_100030113

Overview

Basic Information

• Taxon OID: 3300033513
• Scaffold ID: Ga0316628_100030113
• Source Dataset Name: Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5294
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 41.3769
  • Long. (^o): -82.5097
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006451	Metagenome / Metatranscriptome	373	Y
F063422	Metagenome	129	Y
F081178	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316628_1000301135	F063422	GGTGG	MPLNLGAWWSEPEYKVCGTFKTRGYCILRKLHELDPARLNTAMTNLYREQEKEPQDITKVEWKAILEYMGAGPEERSEGGSQGQAHHLRPTVA
Ga0316628_1000301137	F006451	GGAG	MSPSDDLPHSIREKILAGGLPKENCRVTWFGFGTGVVCTACDQPIAADDVEVECDLPGGGTIRLHRKCYDVWSNEWPTCVV
Ga0316628_1000301138	F081178	GAG	MTVREQETLLRALDLWRKAVGEMTWEGRAEAALALLIVRDDEIEALRRRIQGGKIQ