Scaffold Ga0326732_1075376

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326732_1075376

Scaffold Ga0326732_1075376

Overview

Basic Information
Taxon OID	3300033501 Open in IMG/M
Scaffold ID	Ga0326732_1075376 Open in IMG/M
Source Dataset Name	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF12FN SIP fraction
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	553
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.3286	Long. (^o)	-76.4792	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052414	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326732_10753761	F052414	N/A	VSSYRGHYMTPEETQKNEERVGAIRAQIDEIPAMLDGTLMTKHNRVKRKDGSVHVSPEHCTFQYRGADGKRRWKRIPRNAKAVVGRLVRAAERYRALEREYTARLTEISLADGGKKNS

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