NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0326760_1007646

Scaffold Ga0326760_1007646


Overview

Basic Information
Taxon OID3300033490 Open in IMG/M
Scaffold IDGa0326760_1007646 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Geyser Creek Basin, Yellowstone National Park, WY, United States - GCR.EP_S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3393
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.6904Long. (o)-110.7291Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069506Metagenome124N
F086364Metagenome111N
F100012Metagenome103N
F104114Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0326760_10076463F104114AGGAGGMERLRLWLSLTQDEKFAAAEKELKDAIVARYDEFADEWSLVRSIEDIAPGALAEIVIQTVEALLGLQWRLEWDYDADADDMELDSGATTYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFRDAVQAIVDLADIIAEKLPVVRSQVLSLKEVQ
Ga0326760_10076465F086364AGGAGGMEREKIIAALETAFAEISGAEYEDEPETFAEFLESFKKFRDPDFPVYWIPWTIEEAVEALTDRKFGWHEDVLKDEWSYTGEFSFICVDPETLKCLTAERSNGSCTVSVVFPILSIDDAVQVVEYFLRLVQQA
Ga0326760_10076466F069506GGAGGMQVERLTYTEEQIKQAIEEAWQELLQEADAENYSLEEYLEDYRKYWDDPDFPNDVPELIMRTVEKIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREHTFDGVNVHRFINVAGTVVNYEDIVRLVTKLLNQIQSALADA
Ga0326760_10076467F100012N/AQALKEAQAEYNIEDLDRFIKQAWEEVDIIDAQIVAELTERAVEILFDQHFLWVHIIESEDCEEWIPDGWYSFVAVHPETGQCLTFLKDPVYSWESRISFSARITSADDAVDAVTGLAELIEQNLKSRAVE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.