NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326760_1004691

Scaffold Ga0326760_1004691


Overview

Basic Information
Taxon OID3300033490 Open in IMG/M
Scaffold IDGa0326760_1004691 Open in IMG/M
Source Dataset NameHot spring sediment microbial communities from Geyser Creek Basin, Yellowstone National Park, WY, United States - GCR.EP_S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4703
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.6904Long. (o)-110.7291Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069506Metagenome124N
F080678Metagenome115N
F086364Metagenome111N
F088087Metagenome109N
F100012Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0326760_100469110F086364AGGAGGMEREKIIAALETAFAEISGAEYEDEPITFAEFLESFAKFRDPDFPVYWIPWAVEEAVEELTGRRFGWHEDVLKDEWSYTGEFSFICVDPETLKCLTAERSNGSCTVSVVLPILGIDDAVQAVEYFLRLVQQA
Ga0326760_10046914F088087GAGGMLKASDGSVWMPVTVSSAPCEVCKRKSRPVVYECTEGKWAGVRVVACPEHAEKAIEKFINGGEE
Ga0326760_10046915F080678GGAGGMFVKKVDAKTTPIAEVYDDWERIWMGEKEIRRFLAYTGLSAPPYNLRVEHFLKFPFLHGISAGKFMRKLQKLGVTWSFNREVVRCGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI
Ga0326760_10046918F100012AGGAGGMDREKVLQALKAAQAEYNIEDLDRFIKQAWEEADIIDAQIVAELTERAVEILLDQDFLWAHIIESEDCEEWIPDGWYSFIAVHPETGQCLTFLKDPVYSWESRISFSARIRSADDAVDAVTGLAELIEQNLKSRAVE
Ga0326760_10046919F069506GGAGGMQVERLTYTDEQIRQTIEKVWQELLQEADAENYSLEEYLEDYRKYWDEPDFPNDIPELIMRTVEKIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREYTSDGVNVHRFIHVAGTVVNYEDIVRLVTKLLNQIQSALADT
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