Scaffold Ga0326760_1000935

Overview

Basic Information

• Taxon OID: 3300033490
• Scaffold ID: Ga0326760_1000935
• Source Dataset Name: Hot spring sediment microbial communities from Geyser Creek Basin, Yellowstone National Park, WY, United States - GCR.EP_S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13667
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp. WP30 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.6904
  • Long. (^o): -110.7291

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038745	Metagenome / Metatranscriptome	165	Y
F051572	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326760_10009353	F051572	GAGG	MSRGRAYGGPFAEVQKFADVVLGGCKKSLQFLNTYFDLCVLTVLIKTAPAGPMVRIRPEIVRRLVEEVAAAVGGGDRERIRNAMLKRAGEMMAQLRRELGDIAPSEAYVAKLAELFLKKLEA
Ga0326760_10009354	F038745	N/A	MDKAVMAVCGELIQISLTFSTYYPLCLNGPSCAYAEAVERLIRRAAAARDAEELIKMMEGRIKLEELSLPPPALKALAEELGPQPRWLDALAASFFRLYLGVYRRRRVDGRDLAFALCLWAQKKRREDPWNPLWRAAELKPDKLYTEEEARKALAINEALFRRLWRRALAGDKAYGFQLILAALSLMATPPRSV