NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0299912_10258440

Scaffold Ga0299912_10258440


Overview

Basic Information
Taxon OID3300033489 Open in IMG/M
Scaffold IDGa0299912_10258440 Open in IMG/M
Source Dataset NameSoil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1476
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)42.9888Long. (o)-108.3994Alt. (m)Depth (m)214
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078882Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0299912_102584401F078882GAGGMKFNSKRETILSPIAAGRSFLYILYILACAIFFSVMALLLPSPAVASLPEMARLEVSDAVTTDGTRSLFKGYMSLGLLPEAASLLERRVRLGVFPAETAAPLFDEVVSAQGRFDDPERLVAVCEAAIRSGIRTPLILYSYGTGLRGIRGRLGDASAILAQVGSVDPYRLLALYSLGQIAAERGEAGTALDLFRRVEEGAGGVERGGFLAARAARSRAELLLSTGKSLDAAPVFEALLREEGNPMDRIGLAVAGDNSVHTLEHLPAELIAGRPLEDRVRFLLLLGGVARKSGRDEMAVDRLTRAGKELEESLSSAAPPSSEAPARSEIVESLRLQLSRLRQIRQSLSSREAPLGEAARAEVVELLVGMLFADRTAFLA

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