Scaffold Ga0316624_10216618

Overview

Basic Information

• Taxon OID: 3300033486
• Scaffold ID: Ga0316624_10216618
• Source Dataset Name: Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1494
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 41.3776
  • Long. (^o): -82.512
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000696	Metagenome / Metatranscriptome	931	Y
F000739	Metagenome / Metatranscriptome	913	Y
F031613	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316624_102166181	F031613	GAGG	MPITITLLPSNEDGSGSNLFYAIGTLTFSGNYPTGGDTLDFTTVADKL
Ga0316624_102166182	F000696	GGAG	MPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDVLLVVPAVAQADTSLQVSITDATAPPNQLPTDLLVPIKIWERPNGSTDDFLEMVDLTQHGGLPSRVQDVTLSVWEWRADGIYFLGATQDTQIRLRYAKAYPDFTDATSPVLVRNAQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVSAAVRREQQSARRRRPFSSRSGYTPF
Ga0316624_102166183	F000739	AGG	VPLQIQATRFQTTMNFTRFELWLKGVLAAAISGAAGGVLTGFAAVGIDPQHFNLQTGMGATLRIGAAAALINAVIGVAAYLQKSPLPNDE